| Director General | Chin-I Chang | (02)24622101#2201 |
| Deputy Director | Hsin-Ming Yeh | (02)24622101#2202 |
| Chief Secretary | Chen-Te Tseng | (02)24622101#2203 |
| Secretariat | Fu-Sheng Hsu | (02)24622101#2268 |
| Personnel Office | Yu-Ping Jiang | (02)24622101#2211 |
| Accounting Office | FU-SHENG PAN | (02)24622101#2221 |
| Civil Service Ethic Office | Chun-Huan Chang | (02)24622101#2236 |
| Marine Fisheries Division | Chang Ke Yang | (02)24622101#2401 |
| Aquaculture Division | Fu-Shen Tseng | (02)24622101#2801 |
| Seafood Technology Division | Huey–Jine Chai | (02)24622101#2601 |
| Technical Service Division | Hui-Ping Tsai | (02)24622101#2501 |
| Freshwater Aquaculture Research Center | Shuenn-Der Yang | (047)772175 |
| Freshwater Aquaculture Research Center Chupei Station | Shuenn-Der Yang | (04)7772175 |
| Mariculture Research Center | Jinn-Rong Hseu | (06)7880461 |
| Mariculture Research Center Taihsi Station | Jinn-Rong Hseu | (05)6982921 |
| Coastal and offshore Fishery Research Center | Jinn-Shing Weng | (07)8218104 |
| Tungkang Aquaculture Research Center | Feng-Cheng Wu | (08)8324121~3 |
| Eastern Fishery Research Center | Yuan-Shing Ho | (089)850090 |
| Penghu Fishery Research Center | Hern-Yi Hsieh | (06)9953416 |